Index

A

analyze() (hydroangleanalyzer.contact_angle_method.contact_angle_analyzer.BaseContactAngleAnalyzer method) (hydroangleanalyzer.contact_angle_method.contact_angle_analyzer.BinningContactAngleAnalyzer method) (hydroangleanalyzer.contact_angle_method.contact_angle_analyzer.SlicedContactAngleAnalyzer method) (hydroangleanalyzer.visualization_angles.BaseTrajectoryAnalyzer method)

analyze_lines() (hydroangleanalyzer.contact_angle_method.sliced_method.SurfaceDefinition method) AseParser (class in hydroangleanalyzer.parser) AseWallParser (class in hydroangleanalyzer.parser) AseWaterMoleculeFinder (class in hydroangleanalyzer.parser)

B

BaseContactAngleAnalyzer (class in hydroangleanalyzer.contact_angle_method.contact_angle_analyzer) BaseParser (class in hydroangleanalyzer.parser) BaseTrajectoryAnalyzer (class in hydroangleanalyzer.visualization_angles) BinningContactAngleAnalyzer (class in hydroangleanalyzer.contact_angle_method.contact_angle_analyzer) BinningTrajectoryAnalyzer (class in hydroangleanalyzer.visualization_angles) box_length_max() (hydroangleanalyzer.parser.AseParser method) (hydroangleanalyzer.parser.AseWallParser method) (hydroangleanalyzer.parser.BaseParser method) (hydroangleanalyzer.parser.DumpParser method) (hydroangleanalyzer.parser.DumpWallParser method) (hydroangleanalyzer.parser.XYZParser method) (hydroangleanalyzer.parser.XYZWaterMoleculeFinder method)

box_size_x() (hydroangleanalyzer.parser.AseParser method) (hydroangleanalyzer.parser.BaseParser method) (hydroangleanalyzer.parser.DumpParser method) (hydroangleanalyzer.parser.XYZParser method) box_size_y() (hydroangleanalyzer.parser.AseParser method) (hydroangleanalyzer.parser.AseWallParser method) (hydroangleanalyzer.parser.BaseParser method) (hydroangleanalyzer.parser.DumpParser method) (hydroangleanalyzer.parser.DumpWallParser method) (hydroangleanalyzer.parser.XYZParser method)

C

calculate_polygon_area() (hydroangleanalyzer.visualization_angles.SlicedTrajectoryAnalyzer static method) circular_segment_area() (hydroangleanalyzer.visualization_angles.BinningTrajectoryAnalyzer static method) compare_statistics() (hydroangleanalyzer.visualization_angles.MethodComparison method)

compute_contact_angle() (hydroangleanalyzer.contact_angle_method.binning_method.HyperbolicTangentModel method) compute_isoline() (hydroangleanalyzer.contact_angle_method.binning_method.HyperbolicTangentModel method) compute_statistics() (hydroangleanalyzer.visualization_angles.BaseTrajectoryAnalyzer method) ContactAngleAnimator (class in hydroangleanalyzer.visualization_angles)

D

density_contribution() (hydroangleanalyzer.contact_angle_method.sliced_method.SurfaceDefinition static method) density_profile() (hydroangleanalyzer.contact_angle_method.sliced_method.SurfaceDefinition static method) DropletSlicedPlotter (class in hydroangleanalyzer.visualization_angles)

DropletSlicedPlotterPlotly (class in hydroangleanalyzer.visualization_angles) DumpParser (class in hydroangleanalyzer.parser) DumpWallParser (class in hydroangleanalyzer.parser) DumpWaterMoleculeFinder (class in hydroangleanalyzer.parser)

E

evaluate() (hydroangleanalyzer.contact_angle_method.binning_method.HyperbolicTangentModel method)

F

find_highest_wall_part() (hydroangleanalyzer.parser.AseWallParser method) find_highest_wall_particle() (hydroangleanalyzer.parser.AseWallParser method) (hydroangleanalyzer.parser.DumpWallParser method) fit() (hydroangleanalyzer.contact_angle_method.binning_method.HyperbolicTangentModel method) fit_density_profile() (hydroangleanalyzer.contact_angle_method.sliced_method.SurfaceDefinition method) frame_count() (hydroangleanalyzer.parser.AseParser method) (hydroangleanalyzer.parser.AseWallParser method) (hydroangleanalyzer.parser.BaseParser method) (hydroangleanalyzer.parser.DumpParser method) (hydroangleanalyzer.parser.DumpWallParser method) (hydroangleanalyzer.parser.XYZParser method)

frame_tot() (hydroangleanalyzer.parser.AseWallParser method) (hydroangleanalyzer.parser.BaseParser method)

G

generate_animation() (hydroangleanalyzer.visualization_angles.ContactAngleAnimator method) get_clean_label() (hydroangleanalyzer.visualization_angles.BaseTrajectoryAnalyzer method) get_contact_angles() (hydroangleanalyzer.visualization_angles.BaseTrajectoryAnalyzer method) (hydroangleanalyzer.visualization_angles.BinningTrajectoryAnalyzer method) (hydroangleanalyzer.visualization_angles.SlicedTrajectoryAnalyzer method) get_method_name() (hydroangleanalyzer.visualization_angles.BaseTrajectoryAnalyzer method) (hydroangleanalyzer.visualization_angles.BinningTrajectoryAnalyzer method) (hydroangleanalyzer.visualization_angles.SlicedTrajectoryAnalyzer method) get_parameter_strings() (hydroangleanalyzer.contact_angle_method.binning_method.HyperbolicTangentModel method) get_parameters() (hydroangleanalyzer.contact_angle_method.binning_method.HyperbolicTangentModel method) get_profile_coordinates() (hydroangleanalyzer.parser.AseParser method) (hydroangleanalyzer.parser.AseWallParser method) (hydroangleanalyzer.parser.BaseParser method) (hydroangleanalyzer.parser.DumpParser method) (hydroangleanalyzer.parser.DumpWallParser method) (hydroangleanalyzer.parser.XYZParser method) (hydroangleanalyzer.parser.XYZWaterMoleculeFinder method)

get_surface_areas() (hydroangleanalyzer.visualization_angles.BaseTrajectoryAnalyzer method) (hydroangleanalyzer.visualization_angles.BinningTrajectoryAnalyzer method) (hydroangleanalyzer.visualization_angles.SlicedTrajectoryAnalyzer method) get_water_oxygen_ids() (hydroangleanalyzer.parser.DumpWaterMoleculeFinder method) get_water_oxygen_indices() (hydroangleanalyzer.parser.AseWaterMoleculeFinder method) (hydroangleanalyzer.parser.XYZWaterMoleculeFinder method) get_water_oxygen_positions() (hydroangleanalyzer.parser.AseWaterMoleculeFinder method) (hydroangleanalyzer.parser.XYZWaterMoleculeFinder method)

H

hydroangleanalyzer.contact_angle_method.binning_method module hydroangleanalyzer.contact_angle_method.contact_angle_analyzer module hydroangleanalyzer.contact_angle_method.sliced_method module

hydroangleanalyzer.parser module hydroangleanalyzer.visualization_angles module HyperbolicTangentModel (class in hydroangleanalyzer.contact_angle_method.binning_method)

L

load_data() (hydroangleanalyzer.visualization_angles.BaseTrajectoryAnalyzer method) (hydroangleanalyzer.visualization_angles.BinningTrajectoryAnalyzer method) (hydroangleanalyzer.visualization_angles.SlicedTrajectoryAnalyzer method)

load_dump_ovito() (hydroangleanalyzer.parser.DumpWallParser method) load_files() (hydroangleanalyzer.visualization_angles.BinningTrajectoryAnalyzer method) load_xyz_file() (hydroangleanalyzer.parser.XYZParser method) (hydroangleanalyzer.parser.XYZWaterMoleculeFinder method)

M

mean_surface_frame() (hydroangleanalyzer.visualization_angles.SlicedTrajectoryAnalyzer method) MethodComparison (class in hydroangleanalyzer.visualization_angles) module hydroangleanalyzer.contact_angle_method.binning_method hydroangleanalyzer.contact_angle_method.contact_angle_analyzer hydroangleanalyzer.contact_angle_method.sliced_method hydroangleanalyzer.parser hydroangleanalyzer.visualization_angles

P

parse() (hydroangleanalyzer.parser.AseParser method) (hydroangleanalyzer.parser.AseWallParser method) (hydroangleanalyzer.parser.BaseParser method) (hydroangleanalyzer.parser.DumpParser method) (hydroangleanalyzer.parser.DumpWallParser method) (hydroangleanalyzer.parser.XYZParser method) (hydroangleanalyzer.parser.XYZWaterMoleculeFinder method) parse_liquid_particles() (hydroangleanalyzer.parser.AseParser method) (hydroangleanalyzer.parser.XYZParser method) plot_liquid_particles() (in module hydroangleanalyzer.visualization_angles)

plot_mean_alfas_evolution() (hydroangleanalyzer.visualization_angles.SlicedTrajectoryAnalyzer method) plot_mean_angle_vs_surface() (hydroangleanalyzer.visualization_angles.BaseTrajectoryAnalyzer method) plot_median_alfas_evolution() (hydroangleanalyzer.visualization_angles.SlicedTrajectoryAnalyzer method) plot_overlay_comparison() (hydroangleanalyzer.visualization_angles.MethodComparison method) plot_side_by_side_comparison() (hydroangleanalyzer.visualization_angles.MethodComparison method) plot_slice() (in module hydroangleanalyzer.visualization_angles) plot_surface_and_points() (in module hydroangleanalyzer.visualization_angles) plot_surface_file() (in module hydroangleanalyzer.visualization_angles) plot_surface_points() (hydroangleanalyzer.visualization_angles.DropletSlicedPlotter method) (hydroangleanalyzer.visualization_angles.DropletSlicedPlotterPlotly method)

R

read_data() (hydroangleanalyzer.visualization_angles.BinningTrajectoryAnalyzer method)

read_surface_file() (in module hydroangleanalyzer.visualization_angles)

S

SlicedContactAngleAnalyzer (class in hydroangleanalyzer.contact_angle_method.contact_angle_analyzer) SlicedTrajectoryAnalyzer (class in hydroangleanalyzer.visualization_angles)

summary() (hydroangleanalyzer.contact_angle_method.contact_angle_analyzer.BaseContactAngleAnalyzer method) SurfaceDefinition (class in hydroangleanalyzer.contact_angle_method.sliced_method)

X

XYZParser (class in hydroangleanalyzer.parser)

XYZWaterMoleculeFinder (class in hydroangleanalyzer.parser)